Table 1. Summary of Primaclade searches for primers in the genes Knotted1 (KN1), Leafy Hull Sterile1 (LHS1), NADH dehydrogenase (ndhF) and Solanum tuberosum MADS11 (STMADS11)
Gene |
Plant family |
No. Taxa |
Aligned length (bp) |
Divergence (%) |
No. degenerate bases |
No. primers identified |
Maximum coverage (bp) |
Coverage (%) |
|
Kn1 |
Poaceae |
6 |
1040 |
0.9-15.6 |
0 |
3 |
608 |
58.46 |
|
|
|
|
|
|
1 |
23 |
608 |
58.46 |
|
|
|
|
|
|
2 |
102 |
608 |
58.46 |
|
|
|
|
|
|
3 |
153 |
608 |
58.46 |
|
|
|
|
|
|
4 |
211 |
608 |
58.46 |
|
|
|
|
|
|
5 |
276 |
608 |
58.46 |
|
LHS1 |
Poaceae |
4 |
825 |
12.1-21.3 |
0 |
2 |
-- |
|
|
|
|
|
|
|
1 |
8 |
334 |
40.48 |
|
|
|
|
|
|
2 |
36 |
696 |
84.36 |
|
|
|
|
|
|
3 |
47 |
697 |
84.48 |
|
|
|
|
|
|
4 |
72 |
704 |
85.33 |
|
|
|
|
|
|
5 |
104 |
704 |
85.33 |
|
ndhF |
Menispermaceae |
6 |
2128 |
1.3-6.7 |
0 |
18 |
1446 |
67.95 |
|
|
|
|
|
|
1 |
105 |
1919 |
90.18 |
|
|
|
|
|
|
2 |
208 |
2020 |
94.92 |
|
|
|
|
|
|
3 |
282 |
2043 |
96.01 |
|
|
|
|
|
|
4 |
321 |
2053 |
96.48 |
|
|
|
|
|
|
5 |
342 |
2053 |
96.48 |
|
STMADS11 |
Poaceae |
13 |
639 |
0.5-39.7 |
0 |
0 |
-- |
-- |
|
|
|
|
|
|
1 |
0 |
-- |
-- |
|
|
|
|
|
|
2 |
0 |
-- |
-- |
|
|
|
|
|
|
3 |
1 |
-- |
-- |
|
|
|
|
|
|
4 |
2 |
65 |
10.17 |
|
|
|
|
|
|
5 |
21 |
263 |
41.15 |
|
STMADS11a |
Poaceae |
10 |
630 |
0.0-24.1 |
0 |
0 |
-- |
-- |
|
|
|
|
|
|
1 |
0 |
-- |
-- |
|
|
|
|
|
|
2 |
6 |
102 |
16.19 |
|
|
|
|
|
|
3 |
19 |
291 |
46.19 |
|
|
|
|
|
|
4 |
45 |
300 |
47.62 |
|
|
|
|
|
|
5 |
83 |
302 |
47.94 |
|
STMADS11b |
Poaceae |
3 |
639 |
21.6-23.5 |
0 |
0 |
-- |
-- |
|
|
|
|
|
|
1 |
2 |
556 |
87.01 |
|
|
|
|
|
|
2 |
12 |
565 |
88.42 |
|
|
|
|
|
|
3 |
20 |
568 |
88.89 |
|
|
|
|
|
|
4 |
44 |
568 |
88.89 |
|
|
|
|
|
|
5 |
85 |
573 |
89.67 |