/* the following lines are all needed in multicntrl.dat ...
   do not add or delete lines but change entry on left of each
   line as you see fit ...  */
finaltree
2 ... number of genes ... FOLLOWING LINES CONTAIN ONLY NAMES OF DATA FILES
oest.gene1
oest.gene2
10000 ... numsamps: How many times should the Markov chain be sampled?
1000 ... sampfreq: How many cycles between samples of the Markov chain?
1000000 ... burnin: How many cycles before the first sample of Markov chain?
1.2 ... rttm: a priori expected number of time units between tip and root
0.01 ... rttmsd: standard deviation of prior for time between tip and root
0.1643172 ... rtrate: mean of prior distribution for rate at root node
0.1643172 ... rtratesd: standard deviation of prior for rate at root node
1 ... brownmean: mean of prior for brownian motion constant "nu"
1 ... brownsd: std. deviation of prior for brownian motion constant "nu"
/* the following lines are all needed (i.e., do not delete them) but you may 
   not want to alter entries unless you are familiar with the computer code */
1.0  ... minab: parameter for beta prior on proportional node depth
0.1 ... newk: parameter in Markov chain proposal step
0.5 ... othk: parameter in Markov chain proposal step
0.5 ... thek: parameter in Markov chain proposal step
10.0 ... bigtime: number higher than time units between tip and root could
                   be in your wildest imagination
/* the program will expect the entry below to be the number of constraints
   and then the specified number of constraints should follow on
   subsequent lines 
   Use L for the age as the lower boundary for the node age (must be older than)
   Use U for the age being the upper boundary (must be younger than)*/
5 ... number of constraints on node times
L 31 0.4
L 49 0.54
L 50 0.78
L 51 1.08
L 52 1.19
0 ... number of tips which are not collected at time 0
0  ... nodata: 1 means approximate prior, 0 means approximate posterior
0 ...commonbrown: 1 if all genes have same tendency to change rate, 0 otherwise